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Top 9 Best Shopify Quickbooks Integration Apps in 2026

Last updated: October 31 2025

Written and researched by experts at Avada Learn more about our methodology

9+ Best Shopify Quickbooks Integration Apps from hundreds of the Quickbooks Integration reviews in the market (Shopify Apps Store, Shopify Apps) as derived from AVADA Commerce Ranking which is using AVADA Commerce scores, rating reviews, search results, social metrics. The bellow reviews were picked manually by AVADA Commerce experts, if your app about Quickbooks Integration does not include in the list, feel free to contact us. The best Quickbooks Integration app collection is ranked and result in October 2025, the price from 0.

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Quick Comparisons of the Best Shopify Quickbooks Integration Apps
# App Name Vendor Pricing Rating Image Action
1 Stock Sync Inventory Update Stock Sync Free plan available. 14-day free trial. Additional charges may apply. 4.7/5 Shopify Quickbooks Integration app by Stock Sync Get app
2 TradeGecko - Multichannel inventory management TradeGecko From $249/month. 14-day free trial. Additional charges may apply. 4.3/5 Shopify Quickbooks Integration app by TradeGecko Get app
3 ChannelApe ChannelApe From $200/month. 7-day free trial. 4.8/5 Shopify Quickbooks Integration app by ChannelApe Get app
4 Webgility Unify Online Webgility, Inc. $129/month. 15-day free trial. 4.3/5 Shopify Quickbooks Integration app by Webgility, Inc. Get app
5 Cloud Cart Connector JMA Web Technologies From $69/month. 14-day free trial. Additional charges may apply. 4.3/5 Shopify Quickbooks Integration app by JMA Web Technologies Get app
6 Exportly Exportly $10/month. 15-day free trial. 5.0/5 Shopify Quickbooks Integration app by Exportly Get app
7 Connex for QuickBooks JMA Web Technologies From $69/month. 14-day free trial. Additional charges may apply. 5.0/5 Shopify Quickbooks Integration app by JMA Web Technologies Get app
8 Flowify Flowify From $19/month. 7-day free trial. 0/5 Shopify Quickbooks Integration app by Flowify Get app
9 Autofy: QuickBooks Integration Propelware $99/month. 30-day free trial. 0.0/5 Shopify Quickbooks Integration app by Propelware Get app

Stock Sync Inventory Update

Shopify Quickbooks Integration app by Stock Sync

Highlight features

  • Stay synced with your offline inventory system
  • Provide support for multiple formats and sources
  • Set time for your inventory updates
  • Provide help in managing suppliers/dropshipper feed
  • Enable users to remove the product from stores
Price:
Free plan available. 14-day free trial. Additional charges may apply.
Rating:
4.7 / 5
More information / Get app

TradeGecko - Multichannel inventory management

Shopify Quickbooks Integration app by TradeGecko

Highlight features

  • Make order routing & logic become automated
  • Join orders from various source with inventory and accounting apps
  • Keep track of products across channels, warehouses, fulfillment locations
  • Store data for purchase histories and customer-specific insights
  • Provide reports, calculations and forecasts
Price:
From $249/month. 14-day free trial. Additional charges may apply.
Rating:
4.3 / 5
More information / Get app

ChannelApe

Shopify Quickbooks Integration app by ChannelApe

Highlight features

  • Assist to accept orders from many purchasers in various types of format
  • Support EDI which consists of 846, 940, 832, 944,...
  • Support multiple warehouses globally to save the delivery costs
  • Automatically synchronize the product catalog to any B2B + B2C integrations
  • Set prices, quantities, segments by channel
Price:
From $200/month. 7-day free trial.
Rating:
4.8 / 5
More information / Get app

Webgility Unify Online

Shopify Quickbooks Integration app by Webgility, Inc.

Highlight features

  • Provide support you for your eCommerce bookkeeping
  • Keep track of your fees and cost
  • Help users in complying with sales tax
  • Track performance and calculate profit per order
  • Control your orders, inventory,... in a single dashboard
Price:
$129/month. 15-day free trial.
Rating:
4.3 / 5
More information / Get app

Cloud Cart Connector

Shopify Quickbooks Integration app by JMA Web Technologies

Highlight features

  • Automate financial transactions
  • Automatically sync QuickBooks Online's inventory updates on Shopify stores
  • Set up in a few minutes without software downloading
  • Integrate with Amazon, Walmart, ebBay and more
  • Multi-currency support
Price:
From $69/month. 14-day free trial. Additional charges may apply.
Rating:
4.3 / 5
More information / Get app

Exportly

Shopify Quickbooks Integration app by Exportly

Highlight features

  • Customize the order exports
  • Export the orders and display on the charts easily
  • Create the invoices by using the customer, product information
  • Integrate with Quickbooks Online
  • Support to connect to Quickbooks Online Company
Price:
$10/month. 15-day free trial.
Rating:
5.0 / 5
More information / Get app

Connex for QuickBooks

Shopify Quickbooks Integration app by JMA Web Technologies

Highlight features

  • Synchronize customer information, products or refund and post sales
  • Synchronize inventory updates within seconds
  • Allow users to set up everything under a minute without software or plugins
  • Provide multiple channels support
  • Update prices and sell products in more than a currency
Price:
From $69/month. 14-day free trial. Additional charges may apply.
Rating:
5.0 / 5
More information / Get app

Flowify

Shopify Quickbooks Integration app by Flowify

Highlight features

  • Summarize transactions to QuickBooks Desktop and Quickbooks Online
  • Support to gather daily sales in the PayPal
  • Automated accounting tool
  • Easy to automatically fetch Shopify settlement
  • Allow to integrate with QuickBooks
Price:
From $19/month. 7-day free trial.
Rating:
0 / 5
More information / Get app

Autofy: QuickBooks Integration

Shopify Quickbooks Integration app by Propelware

Highlight features

  • Integrate with QuickBooks and accounting system
  • Automate users' work to focus on customers
  • Get rid of data entry by automating process of users' sales
  • Update inventory based on inventory rules
  • Process data accurately to avoid item details and missing address
Price:
$99/month. 30-day free trial.
Rating:
0.0 / 5
More information / Get app

How AVADA.io ranks Shopify Quickbooks Integration apps list

These above 9 Quickbooks Integration apps for Shopify are ranked based on the following criterias:

  • The ratings on Shopify App store
  • The app’s rank on search engines
  • The prices and features
  • The app provider’s reputation
  • Social media metrics such as Facebook, Twitter and Google +
  • Reviews and assessment by AVADA.io

Top 9 Shopify Quickbooks Integration Apps

Special thanks to all vendors which contributed the best 9 Shopify Quickbooks Integration apps. We honestly recommend you to give every app above a try if possible. We create Shopify apps review series with the aim of helping Shopify online stores find the best Quickbooks Integration for their website. All of the information on the review (including features, description, prices, and links) is collected from the vendor’s website or their own published page/ selling channels.

The list of the 9 best Shopify Quickbooks Integration apps is kept up-to-date on a regular basis by our team. Please feel free to reach us out if you have any questions related to this app review.

Don’t see your app on the list? Wanna contribute more content to this review? Contact us

Sam
Sam Nguyen is the CEO and founder of Avada Commerce, an e-commerce solution provider headquartered in Vietnam. He is an expert on the Shopify e-commerce platform for online stores and retail point-of-sale systems. Sam loves talking about e-commerce and he aims to help over a million online businesses grow and thrive.